PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g007340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 266aa    MW: 29235.8 Da    PI: 8.2061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g007340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21.1e-064288353
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                     ++ erE+ RRd++++ f eL   l ++     +K +K++ L+ +++ +k+
  Csa12g007340.1 42 SSKAEREKLRRDKLKEQFLELGNALDPN----RPKSDKVSLLTDTIQMLKD 88
                    5789*********************997....79************99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-1238109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.1343989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-44288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1043110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-54595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDQSKKLKAC SESDSSVSSS SSTSTSGHNL RAEMVNKEAV CSSKAEREKL RRDKLKEQFL  60
ELGNALDPNR PKSDKVSLLT DTIQMLKDVM NQVERLKAEY ATLSQESREL IQEKTELREE  120
KATLKSDIEI LNAQYQHRVR SMVPWIPHYT YPIPVVAITQ GQSTFIPYSA SVVNPLIEQA  180
SVQKRSSSSS GASSKQHSKN KSLDQGNDDK YDVGLELELK IHASSLVQQD VSGKEKRESL  240
TPTANSSSQA VQGSPPGGVN DILKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446832.10.0PREDICTED: transcription factor bHLH11-like
SwissprotQ8W2F21e-130BH011_ARATH; Transcription factor bHLH11
TrEMBLR0H1A01e-140R0H1A0_9BRAS; Uncharacterized protein
STRINGAT4G36060.11e-128(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36060.11e-116bHLH family protein